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FerB - flavoenzyme NAD(P)H:(acceptor) oxidoreductase (FerB) from Paracoccus denitrificans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 293 15% PEG 4000, 0.2M Ammonium sulphate, 0.1M Sodium acetate, 0.1M MES buffer pH 5.00, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.35 47.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.03 α = 90 b = 89.14 β = 90 c = 71.28 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-11-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.97522, 0.97714, 0.97753 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 19.56 76.9 75170 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.436 86.04
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.4 19.11 72133 3037 97.36 0.16065 0.16009 0.17386 0.1762 RANDOM 10.834
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 -0.14 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.94 r_dihedral_angle_4_deg 20.818 r_dihedral_angle_3_deg 13.676 r_dihedral_angle_1_deg 13.186 r_scangle_it 5.24 r_scbond_it 3.648 r_angle_other_deg 2.386 r_mcangle_it 2.084 r_angle_refined_deg 1.765 r_mcbond_it 1.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.94 r_dihedral_angle_4_deg 20.818 r_dihedral_angle_3_deg 13.676 r_dihedral_angle_1_deg 13.186 r_scangle_it 5.24 r_scbond_it 3.648 r_angle_other_deg 2.386 r_mcangle_it 2.084 r_angle_refined_deg 1.765 r_mcbond_it 1.298 r_chiral_restr 0.094 r_gen_planes_refined 0.017 r_bond_refined_d 0.013 r_bond_other_d 0.005 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2848 Nucleic Acid Atoms Solvent Atoms 451 Heterogen Atoms 90
Software Software Software Name Purpose MAR345 data collection Auto-Rickshaw phasing REFMAC refinement XDS data reduction XDS data scaling