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Structures of Alkaloid Biosynthetic Glucosidases Decode Substrate Specificity
Crystallization Crystal Properties Matthews coefficient Solvent content 3.18 61.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.885 α = 90 b = 129.552 β = 90 c = 216.918 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray PIXEL PSI PILATUS 6M 2009-04-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.43 65.16 100 55223 55223 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.43 65.16 2 55223 52461 2762 100 0.23782 0.20761 0.20604 0.1795 0.23782 0.2152 RANDOM 34.783
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.09 -0.35 -5.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.105 r_dihedral_angle_4_deg 20.766 r_dihedral_angle_3_deg 17.23 r_dihedral_angle_1_deg 5.966 r_scangle_it 3.611 r_scbond_it 2.186 r_angle_refined_deg 1.429 r_mcangle_it 1.417 r_mcbond_it 0.726 r_chiral_restr 0.089
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.105 r_dihedral_angle_4_deg 20.766 r_dihedral_angle_3_deg 17.23 r_dihedral_angle_1_deg 5.966 r_scangle_it 3.611 r_scbond_it 2.186 r_angle_refined_deg 1.429 r_mcangle_it 1.417 r_mcbond_it 0.726 r_chiral_restr 0.089 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7560 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement