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S. aureus GyrB ATPase domain in complex with a small molecule inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 sitting drop, inhibitor soak 7.5 293 19-30% PEG3350, 0.1MHepes, pH 7.5, 0.2M MgCl2, sitting drop, inhibitor soak, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.22 44.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.175 α = 90 b = 55.497 β = 100.67 c = 51.349 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 mirrors 2010-11-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 35.175 88.3 0.024 21.8 2.7 124850 43084 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.73 72.6 0.18 0.18 4.4 1.9 5136
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.64 35.17 42877 2181 88.15 0.1575 0.1562 0.182 0.1818 RANDOM 16.4114
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.19 0.11 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.629 r_dihedral_angle_4_deg 15.928 r_dihedral_angle_3_deg 12.12 r_dihedral_angle_1_deg 5.265 r_scangle_it 3.237 r_scbond_it 1.869 r_angle_refined_deg 1.062 r_mcangle_it 0.968 r_angle_other_deg 0.769 r_mcbond_it 0.485
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.629 r_dihedral_angle_4_deg 15.928 r_dihedral_angle_3_deg 12.12 r_dihedral_angle_1_deg 5.265 r_scangle_it 3.237 r_scbond_it 1.869 r_angle_refined_deg 1.062 r_mcangle_it 0.968 r_angle_other_deg 0.769 r_mcbond_it 0.485 r_mcbond_other 0.108 r_chiral_restr 0.066 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3058 Nucleic Acid Atoms Solvent Atoms 440 Heterogen Atoms 60
Software Software Software Name Purpose d*TREK data scaling SCALA data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction JDirector data collection XDS data reduction