☰ Navigation Tabs
Structural activation of the transcriptional repressor EthR from M. tuberculosis by single amino-acid change mimicking natural and synthetic ligands
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.17 M ammonium sulfate, 0.085 M sodium cacodylate (pH 6.5), 15% glycerol and 25, 35% polyethylene glycol 8,000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.51 50.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.102 α = 90 b = 119.102 β = 90 c = 33.649 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 0.97625 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 42.11 98.7 36297 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 42.11 18656 1005 100 0.19612 0.19284 0.1927 0.25677 0.2529 RANDOM 30.348
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 0.29 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.652 r_dihedral_angle_3_deg 15.912 r_dihedral_angle_4_deg 12.953 r_scangle_it 7.665 r_dihedral_angle_1_deg 5.519 r_scbond_it 5.211 r_mcangle_it 3.167 r_rigid_bond_restr 2.937 r_angle_refined_deg 2.079 r_mcbond_it 1.948
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.652 r_dihedral_angle_3_deg 15.912 r_dihedral_angle_4_deg 12.953 r_scangle_it 7.665 r_dihedral_angle_1_deg 5.519 r_scbond_it 5.211 r_mcangle_it 3.167 r_rigid_bond_restr 2.937 r_angle_refined_deg 2.079 r_mcbond_it 1.948 r_chiral_restr 0.131 r_bond_refined_d 0.024 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1470 Nucleic Acid Atoms Solvent Atoms 81 Heterogen Atoms 21
Software Software Software Name Purpose HKL-2000 data collection REFMAC refinement MOSFLM data reduction SCALA data scaling