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Crystal structure of the creosote Rubisco activase C-domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 283 0.1 M Tris, 0.2 M trimethylamine N-oxide, 20% PEG MME 2000, pH 8.5, vapor diffusion, hanging drop, temperature 283K
Crystal Properties Matthews coefficient Solvent content 3.14 60.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.919 α = 90 b = 71.919 β = 90 c = 151.698 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-03-16 M SINGLE WAVELENGTH 2 1 CCD 3 1 CCD 4 1 CCD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97921 APS 19-ID 2 3 4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 48.135 99.6 0.092 22.1 9.9 12496 12496
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.98 97.2 0.536 0.536 1.4 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.88 48.13 12496 11875 606 99.55 0.21691 0.21595 0.2342 0.23803 0.2537 RANDOM 51.106
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.8 0.4 0.8 -1.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.008 r_dihedral_angle_3_deg 14.419 r_dihedral_angle_4_deg 12.394 r_scangle_it 5.736 r_dihedral_angle_1_deg 5.692 r_scbond_it 3.813 r_mcangle_it 2.649 r_angle_refined_deg 1.742 r_mcbond_it 1.708 r_angle_other_deg 0.993
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.008 r_dihedral_angle_3_deg 14.419 r_dihedral_angle_4_deg 12.394 r_scangle_it 5.736 r_dihedral_angle_1_deg 5.692 r_scbond_it 3.813 r_mcangle_it 2.649 r_angle_refined_deg 1.742 r_mcbond_it 1.708 r_angle_other_deg 0.993 r_mcbond_other 0.569 r_chiral_restr 0.106 r_bond_refined_d 0.016 r_gen_planes_refined 0.013 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 780 Nucleic Acid Atoms Solvent Atoms 42 Heterogen Atoms 6
Software Software Software Name Purpose SCALA data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection XSCALE data scaling SHELXD phasing