☰ Navigation Tabs
Crystal Structure of SacUVDE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J6V PDB entry 2j6v
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 298 20 % PEG3350, 0.25 M NH4Cl, pH 7.0, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.2 43.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.075 α = 102.1 b = 53.585 β = 93.02 c = 77.395 γ = 111.77
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 46.05 97.3 0.099 0.099 9.3 3.4 94666 94666 17.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 94 0.52 0.52 1.9 2.4 13351
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2j6v 1.5 46.05 89933 89933 4732 97.27 0.1791 0.17728 0.1758 0.21395 0.2125 RANDOM 21.642
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 0.05 0.66 0.17 0.27 0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.14 r_dihedral_angle_4_deg 15.187 r_dihedral_angle_3_deg 14.271 r_dihedral_angle_1_deg 5.987 r_angle_refined_deg 2.211 r_chiral_restr 0.158 r_bond_refined_d 0.026 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4666 Nucleic Acid Atoms Solvent Atoms 577 Heterogen Atoms 2
Software Software Software Name Purpose DNA data collection MOLREP phasing REFMAC refinement iMOSFLM data reduction SCALA data scaling