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Crystal structure of T4 gp33 bound to E. coli RNAP beta-flap domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 295 0.1 M triethylamine N-oxide, 20% PEG2000 MME, 0.1 M Tris, pH 8.5, VAPOR DIFFUSION, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.31 62.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.218 α = 90 b = 112.25 β = 90 c = 164.847 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MAR CCD 165 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X3A 0.9785 NSLS X3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 28.995 0.053 3 10635 10551
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3 28.995 9980 10051 500 98.93 0.25293 0.25086 0.2569 0.29485 0.2924 RANDOM 112.814
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.47 5.16 -2.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.208 r_dihedral_angle_3_deg 15.028 r_dihedral_angle_4_deg 13.195 r_dihedral_angle_1_deg 3.965 r_scangle_it 1.211 r_scbond_it 0.689 r_angle_refined_deg 0.656 r_mcangle_it 0.607 r_mcbond_it 0.322 r_chiral_restr 0.047
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.208 r_dihedral_angle_3_deg 15.028 r_dihedral_angle_4_deg 13.195 r_dihedral_angle_1_deg 3.965 r_scangle_it 1.211 r_scbond_it 0.689 r_angle_refined_deg 0.656 r_mcangle_it 0.607 r_mcbond_it 0.322 r_chiral_restr 0.047 r_mcbond_other 0.033 r_gen_planes_refined 0.011 r_bond_refined_d 0.004 r_gen_planes_other 0.001 r_bond_other_d r_angle_other_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2331 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection SnB phasing REFMAC refinement HKL-2000 data reduction SCALA data scaling