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Crystal structure of porcine rotavirus CRW-8 VP8* in complex with N-glycolylneuraminic acid
Crystallization Crystal Properties Matthews coefficient Solvent content 2.44 49.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.982 α = 90 b = 59.646 β = 90 c = 111.964 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 59.65 29988
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 40.03 29988 1593 99.9 0.18866 0.18677 0.1866 0.22503 0.2243 RANDOM 14.626
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.296 r_dihedral_angle_3_deg 11.662 r_dihedral_angle_4_deg 9.26 r_dihedral_angle_1_deg 5.722 r_scangle_it 1.464 r_angle_refined_deg 1.045 r_scbond_it 0.944 r_mcangle_it 0.681 r_mcbond_it 0.354 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.296 r_dihedral_angle_3_deg 11.662 r_dihedral_angle_4_deg 9.26 r_dihedral_angle_1_deg 5.722 r_scangle_it 1.464 r_angle_refined_deg 1.045 r_scbond_it 0.944 r_mcangle_it 0.681 r_mcbond_it 0.354 r_nbtor_refined 0.306 r_nbd_refined 0.182 r_symmetry_vdw_refined 0.15 r_metal_ion_refined 0.106 r_xyhbond_nbd_refined 0.101 r_symmetry_hbond_refined 0.087 r_chiral_restr 0.057 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2606 Nucleic Acid Atoms Solvent Atoms 363 Heterogen Atoms 114
Software Software Software Name Purpose REFMAC refinement