X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1EE6 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52930.2 M ammonium phosphate monobasic, 0.1 M Tris, 50% v/v (+/-)-2-methyl-2,4-pentanediol, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.5752.11

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.514α = 90
b = 146.685β = 90
c = 162.159γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDBruker Platinum 135HELIOS MIRRORS2011-07-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEBRUKER AXS MICROSTAR1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.52599.60.044624.736.157069270692
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.698.50.14958.233.9712550

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1EE61.5256689866898354399.430.145010.145010.143250.17846RANDOM10.039
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.66-0.680.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.177
r_dihedral_angle_4_deg26.625
r_dihedral_angle_3_deg12.403
r_dihedral_angle_1_deg6.933
r_scangle_it5.085
r_scbond_it3.298
r_angle_refined_deg2.422
r_mcangle_it2.192
r_mcbond_it1.335
r_angle_other_deg1.277
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.177
r_dihedral_angle_4_deg26.625
r_dihedral_angle_3_deg12.403
r_dihedral_angle_1_deg6.933
r_scangle_it5.085
r_scbond_it3.298
r_angle_refined_deg2.422
r_mcangle_it2.192
r_mcbond_it1.335
r_angle_other_deg1.277
r_mcbond_other0.413
r_chiral_restr0.138
r_bond_refined_d0.029
r_gen_planes_refined0.012
r_gen_planes_other0.005
r_bond_other_d0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2953
Nucleic Acid Atoms
Solvent Atoms526
Heterogen Atoms121

Software

Software
Software NamePurpose
PROTEUM PLUSdata collection
MOLREPphasing
REFMACrefinement
SAINTdata reduction
PROTEUM PLUSdata scaling