☰ Navigation Tabs
Rhodopsin kinase (GRK1) L166K mutant at 2.5A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.3 293 12% PEG 6000, 100 mM Na-citrate pH 4.3 and 5% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.23 61.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.541 α = 90 b = 149.808 β = 90 c = 190.879 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.9999 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 99.5 0.086 8 8.2 27804
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 99 0.792 8.1 2732
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 29.6 27797 1403 98.95 0.2088 0.2068 0.2042 0.2449 0.2396 RANDOM 55.635
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.19 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.642 r_dihedral_angle_4_deg 21.99 r_dihedral_angle_3_deg 16.148 r_dihedral_angle_1_deg 6.066 r_scangle_it 2.847 r_scbond_it 1.719 r_angle_refined_deg 1.54 r_mcangle_it 1.09 r_angle_other_deg 0.988 r_mcbond_it 0.562
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.642 r_dihedral_angle_4_deg 21.99 r_dihedral_angle_3_deg 16.148 r_dihedral_angle_1_deg 6.066 r_scangle_it 2.847 r_scbond_it 1.719 r_angle_refined_deg 1.54 r_mcangle_it 1.09 r_angle_other_deg 0.988 r_mcbond_it 0.562 r_mcbond_other 0.1 r_chiral_restr 0.083 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3960 Nucleic Acid Atoms Solvent Atoms 52 Heterogen Atoms 39
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction