☰ Navigation Tabs
Crystal structure of an enolase from pantoea ananatis (efi target efi-501676) with bound d-gluconate and mg
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3GY1 PDB entry 3GY1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 294 Protein (10 mM HEPES pH 7.8, 150 mM Nacl, 10% glycerol, 5 mM DTT, 5 mM MgCl2; Reservoir (1 M K/Na Tartrate, 100 mM MES pH 6.0); Soak (1 M K/Na Tartrate, 100 mM MES pH 6.0, 20% ethylene glycol, 70 mM NaGluconate) 1 min, vapour diffusion, sitting drop, temperature 294K, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.29 46.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.79 α = 90 b = 130.79 β = 90 c = 104.68 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 98 CCD RAYONIX MX225HE mirrors 2011-06-25 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97930 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.598 40 99 0.1 7.1 5.5 118520 118520
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 98.2 0.482 5.1 5789
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB entry 3GY1 1.598 21.223 110754 110754 1848 92.48 0.1396 0.1396 0.1391 0.143 0.1677 0.1716 RANDOM 15.913
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.6241 -0.6241 0.854
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.477 f_angle_d 1.771 f_chiral_restr 0.138 f_bond_d 0.016 f_plane_restr 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6454 Nucleic Acid Atoms Solvent Atoms 954 Heterogen Atoms 67
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHENIX refinement PDB_EXTRACT data extraction HKL-3000 data reduction PHENIX phasing