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Crystal structure of human galectin-3 carbohydrate recognition domain in complex with methyl 3-deoxy-2-O-toluoyl-3-N-toluoyl-beta-D-talopyranoside
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 31% PEG 6000, 100mM MGCl2, 8mM beta merceptoethanol, 100mM Tris-HCL, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.062 α = 90 b = 58.369 β = 90 c = 63.805 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD BRUKER SMART 6000 2009-08-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE MACSCIENCE 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 43.07 97.13 20208 19087 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.59 83.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.55 43.07 2 20208 19087 1034 97.13 0.18 0.16154 0.1599 0.1631 0.1926 0.1856 RANDOM 17.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.82 -0.54 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.272 r_dihedral_angle_4_deg 11.353 r_dihedral_angle_3_deg 10.635 r_dihedral_angle_1_deg 6.56 r_scangle_it 4.673 r_mcangle_it 3.554 r_scbond_it 2.968 r_mcbond_it 2.288 r_angle_refined_deg 1.271 r_angle_other_deg 0.749
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.272 r_dihedral_angle_4_deg 11.353 r_dihedral_angle_3_deg 10.635 r_dihedral_angle_1_deg 6.56 r_scangle_it 4.673 r_mcangle_it 3.554 r_scbond_it 2.968 r_mcbond_it 2.288 r_angle_refined_deg 1.271 r_angle_other_deg 0.749 r_mcbond_other 0.742 r_chiral_restr 0.081 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1101 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms 32
Software Software Software Name Purpose PROTEUM PLUS data collection REFMAC refinement SAINT data reduction SCALA data scaling