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IspH:HMBPP (substrate) structure of the E126D mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3F7T PDB ENTRY 3F7T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 200 mM lithium sulfate, 25% PEG3350, 100 mM Bis-Tris, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.06 40.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.85 α = 90 b = 80.18 β = 90 c = 114.51 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2011-04-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 99.2 0.147 9.3 47801 47419 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 97.4 0.558 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3F7T 1.9 10 47038 44686 2352 100 0.20342 0.20139 0.2131 0.24215 0.2457 RANDOM 10.716
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -1.97 2.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.012 r_dihedral_angle_4_deg 19.455 r_dihedral_angle_3_deg 18.283 r_dihedral_angle_1_deg 6.762 r_scangle_it 5.449 r_scbond_it 3.563 r_angle_refined_deg 2.316 r_rigid_bond_restr 2.281 r_mcangle_it 2.114 r_mcbond_it 1.341
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.012 r_dihedral_angle_4_deg 19.455 r_dihedral_angle_3_deg 18.283 r_dihedral_angle_1_deg 6.762 r_scangle_it 5.449 r_scbond_it 3.563 r_angle_refined_deg 2.316 r_rigid_bond_restr 2.281 r_mcangle_it 2.114 r_mcbond_it 1.341 r_chiral_restr 0.183 r_bond_refined_d 0.028 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4767 Nucleic Acid Atoms Solvent Atoms 184 Heterogen Atoms 44
Software Software Software Name Purpose XDS data scaling REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing