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IspH:Ligand Mutants - wt 70sec
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3F7T PDB ENTRY 3F7T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 200 mM lithium sulfate, 25% PEG3350, 100 mM Bis-Tris, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 44.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.99 α = 90 b = 80.7 β = 90 c = 111.28 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2011-04-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20 93.7 0.051 11 84965 79612 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.7 89.8 0.482 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3F7T 1.6 10 79456 75318 3964 100 0.21423 0.21273 0.2293 0.24241 0.2528 RANDOM 12.238
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.55 -1.41 1.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.399 r_dihedral_angle_4_deg 21.445 r_dihedral_angle_3_deg 13.892 r_scangle_it 5.255 r_scbond_it 3.971 r_dihedral_angle_1_deg 3.843 r_rigid_bond_restr 2.776 r_mcangle_it 2.543 r_chiral_restr 2.095 r_mcbond_it 1.851
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.399 r_dihedral_angle_4_deg 21.445 r_dihedral_angle_3_deg 13.892 r_scangle_it 5.255 r_scbond_it 3.971 r_dihedral_angle_1_deg 3.843 r_rigid_bond_restr 2.776 r_mcangle_it 2.543 r_chiral_restr 2.095 r_mcbond_it 1.851 r_angle_refined_deg 1.679 r_bond_refined_d 0.023 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4773 Nucleic Acid Atoms Solvent Atoms 603 Heterogen Atoms 46
Software Software Software Name Purpose XDS data scaling REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing