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Crystal structure of NS3/4A protease variant D168A in complex with Telaprevir
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop, vapor diffusion 6.2 295 20-25% PEG 3350, 0.1M MES (pH 6.5), 4% ammonium sulfate, hanging drop, vapor diffusion, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.23 44.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.532 α = 90 b = 69.532 β = 90 c = 79.051 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2011-03-31 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 99.9 0.136 9.7 7.2 7049
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.69 100 0.561 7 1170
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 21.99 7049 332 98.86 0.2089 0.2053 0.234 0.2825 0.3132 RANDOM 52.5702
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.08 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.33 r_dihedral_angle_4_deg 18.097 r_dihedral_angle_3_deg 17.007 r_dihedral_angle_1_deg 7.25 r_scangle_it 1.609 r_angle_refined_deg 1.352 r_scbond_it 1.251 r_angle_other_deg 1.065 r_mcangle_it 0.808 r_mcbond_it 0.433
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.33 r_dihedral_angle_4_deg 18.097 r_dihedral_angle_3_deg 17.007 r_dihedral_angle_1_deg 7.25 r_scangle_it 1.609 r_angle_refined_deg 1.352 r_scbond_it 1.251 r_angle_other_deg 1.065 r_mcangle_it 0.808 r_mcbond_it 0.433 r_chiral_restr 0.073 r_mcbond_other 0.067 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1388 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 56
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction