☰ Navigation Tabs
DNA binding domain of restriction endonuclease bound to DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 sitting drop 5.5 292 0.1 M Bis-Tris (pH 5.5), 0.2 M NH4Cl, 30% PEG4000, sitting drop, temperature 292K
Crystal Properties Matthews coefficient Solvent content 1.75 35.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.046 α = 90 b = 69.087 β = 90 c = 143.896 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS 2010-12-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE OTHER 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 62.257 100 0.132 0.132 14.7 5.6 10488
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 100 0.44 0.44 1.7 5.7 1482
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION 2.7 39.41 10448 1036 99.9 0.223 0.216 0.2124 0.292 0.2872 22.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.36 2.4 -1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.221 r_dihedral_angle_3_deg 16.658 r_dihedral_angle_4_deg 12.421 r_dihedral_angle_1_deg 5.271 r_scangle_it 3.498 r_scbond_it 2.304 r_mcangle_it 1.779 r_mcbond_it 0.922 r_angle_refined_deg 0.876 r_chiral_restr 0.058
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.221 r_dihedral_angle_3_deg 16.658 r_dihedral_angle_4_deg 12.421 r_dihedral_angle_1_deg 5.271 r_scangle_it 3.498 r_scbond_it 2.304 r_mcangle_it 1.779 r_mcbond_it 0.922 r_angle_refined_deg 0.876 r_chiral_restr 0.058 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2471 Nucleic Acid Atoms 486 Solvent Atoms 34 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction StructureStudio data collection MOSFLM data reduction MOLREP phasing