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DNA binding domain of restriction endonuclease bound to DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 sitting drop 6.8 292 0.2 M LiCl, 18% PEG4000, pH 6.8, sitting drop, temperature 292K
Crystal Properties Matthews coefficient Solvent content 1.75 35.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.085 α = 90 b = 67.189 β = 90 c = 142.414 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 FLAT PANEL MAR555 2008-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.81500 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 29.03 99.8 0.07 0.07 18.8 5.6 18339
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 99.9 0.254 0.254 1.2 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR THROUGHOUT 2.2 19.02 16474 16474 1794 99.51 0.20199 0.1955 0.1929 0.26221 0.2566 RANDOM 42.829
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.57 2.83 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.984 r_dihedral_angle_4_deg 24.19 r_dihedral_angle_3_deg 16.067 r_dihedral_angle_1_deg 6.62 r_scangle_it 3.23 r_scbond_it 2.473 r_mcangle_it 1.826 r_angle_refined_deg 1.353 r_mcbond_it 1.144 r_nbtor_refined 0.287
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.984 r_dihedral_angle_4_deg 24.19 r_dihedral_angle_3_deg 16.067 r_dihedral_angle_1_deg 6.62 r_scangle_it 3.23 r_scbond_it 2.473 r_mcangle_it 1.826 r_angle_refined_deg 1.353 r_mcbond_it 1.144 r_nbtor_refined 0.287 r_nbd_refined 0.143 r_symmetry_vdw_refined 0.112 r_chiral_restr 0.088 r_xyhbond_nbd_refined 0.083 r_symmetry_hbond_refined 0.069 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2483 Nucleic Acid Atoms 487 Solvent Atoms 136 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction MOLREP phasing