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The crystal structure of XMRV protease complexed with TL-3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 3.5M NaFormat, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.85 33.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.483 α = 90 b = 65.546 β = 90 c = 69.732 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD marccd 300 mirror 2010-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 99.2 0.05 42.7 7.3 42500 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 95.5 0.438 2.77 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 47.78 41344 1095 99.2 0.17628 0.1756 0.1742 0.20144 0.1775 RANDOM 21.442
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 -0.29 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.437 r_dihedral_angle_3_deg 14.247 r_dihedral_angle_4_deg 13.6 r_dihedral_angle_1_deg 7.537 r_scangle_it 5.187 r_mcangle_it 4.008 r_scbond_it 3.569 r_mcbond_it 2.612 r_angle_refined_deg 1.765 r_chiral_restr 0.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.437 r_dihedral_angle_3_deg 14.247 r_dihedral_angle_4_deg 13.6 r_dihedral_angle_1_deg 7.537 r_scangle_it 5.187 r_mcangle_it 4.008 r_scbond_it 3.569 r_mcbond_it 2.612 r_angle_refined_deg 1.765 r_chiral_restr 0.107 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1738 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms 85
Software Software Software Name Purpose HKL-3000 data collection PHASES phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling