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Crystal structure of the ATP binding domain of Archaeoglobus fulgidus COPB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 0.2M Sodium acetate, 0.1M TRIS.HCl pH 8.5, 30% PEG 4000, 0.01M Magnesium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.95 36.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.052 α = 90 b = 62.682 β = 90 c = 106.059 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2011-04-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97920, 0.9792, 0.9116, 0.9793 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 106.06 95.3 0.033 25 5.63 31479 31479
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.65 93.8 0.237 4.9 4.61
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.59 106.06 31479 29875 1604 95.26 0.2026 0.20095 0.2 0.23316 0.2271 RANDOM 23.933
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.85 0.42 -1.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.108 r_dihedral_angle_3_deg 12.51 r_dihedral_angle_4_deg 11.627 r_dihedral_angle_1_deg 5.808 r_scangle_it 3.535 r_scbond_it 2.077 r_mcangle_it 1.228 r_angle_refined_deg 1.225 r_angle_other_deg 0.786 r_mcbond_it 0.658
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.108 r_dihedral_angle_3_deg 12.51 r_dihedral_angle_4_deg 11.627 r_dihedral_angle_1_deg 5.808 r_scangle_it 3.535 r_scbond_it 2.077 r_mcangle_it 1.228 r_angle_refined_deg 1.225 r_angle_other_deg 0.786 r_mcbond_it 0.658 r_mcbond_other 0.165 r_chiral_restr 0.071 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1971 Nucleic Acid Atoms Solvent Atoms 258 Heterogen Atoms 8
Software Software Software Name Purpose Blu-Ice data collection SOLVE phasing REFMAC refinement CrystalClear data reduction CrystalClear data scaling