☰ Navigation Tabs
Crystal structure of a SusD-like protein (BT_3752) from Bacteroides thetaiotaomicron VPI-5482 at 1.70 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 20.00% polyethylene glycol 6000, 0.20M magnesium chloride, 0.1M sodium cacodylate pH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.17 43.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.586 α = 90 b = 173.545 β = 90 c = 59.215 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (ho rizontal focusing) 2011-05-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97944,0.97899 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.633 97.1 0.089 8.12 107089 -3 16.942
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 94.7 0.644 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 29.633 107051 5339 99.18 0.1404 0.1387 0.1509 0.1742 0.1826 RANDOM 20.9933
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.82 -0.64 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.908 r_dihedral_angle_4_deg 18.336 r_dihedral_angle_3_deg 12.094 r_dihedral_angle_1_deg 5.446 r_scangle_it 3.318 r_scbond_it 2.182 r_angle_refined_deg 1.453 r_mcangle_it 1.302 r_angle_other_deg 0.958 r_mcbond_it 0.775
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.908 r_dihedral_angle_4_deg 18.336 r_dihedral_angle_3_deg 12.094 r_dihedral_angle_1_deg 5.446 r_scangle_it 3.318 r_scbond_it 2.182 r_angle_refined_deg 1.453 r_mcangle_it 1.302 r_angle_other_deg 0.958 r_mcbond_it 0.775 r_mcbond_other 0.268 r_chiral_restr 0.093 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7530 Nucleic Acid Atoms Solvent Atoms 1355 Heterogen Atoms 20
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction SHELX phasing SHARP phasing XSCALE data scaling REFMAC refinement XDS data reduction SHELXD phasing