3SD0

Identification of a Glycogen Synthase Kinase-3b Inhibitor that Attenuates Hyperactivity in CLOCK Mutant Mice


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
3.3262.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.505α = 90
b = 96.01β = 90
c = 124.249γ = 90
Symmetry
Space GroupP 21 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-IDAPS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.75097.4298332905722

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.744.952752228995147397.360.17860.17860.254RANDOM57.1652
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.6-0.050.65
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.743
r_dihedral_angle_4_deg19.381
r_dihedral_angle_3_deg17.954
r_dihedral_angle_1_deg6.379
r_scangle_it3.027
r_scbond_it2.041
r_angle_refined_deg1.939
r_mcangle_it1.19
r_mcbond_it0.647
r_nbtor_refined0.324
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.743
r_dihedral_angle_4_deg19.381
r_dihedral_angle_3_deg17.954
r_dihedral_angle_1_deg6.379
r_scangle_it3.027
r_scbond_it2.041
r_angle_refined_deg1.939
r_mcangle_it1.19
r_mcbond_it0.647
r_nbtor_refined0.324
r_symmetry_hbond_refined0.246
r_nbd_refined0.243
r_symmetry_vdw_refined0.238
r_xyhbond_nbd_refined0.232
r_chiral_restr0.104
r_bond_refined_d0.014
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5592
Nucleic Acid Atoms
Solvent Atoms284
Heterogen Atoms90

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
SERGUIdata collection