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Structure of Yeast Ribonucleotide Reductase 1 R293A with AMPPNP and CDP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7 298 20-25% PEG 3350, 0.1 M HEPES, 0.1 M sodium chloride, pH 7.0, EVAPORATION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.02 39.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.781 α = 90 b = 116.81 β = 90 c = 64.126 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315 2011-03-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.98 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.77 40.29 98.33 0.14 15.2 7.2 20834 18704
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.77 2.85 99.6 0.58 2.2 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Isomorphous THROUGHOUT 2.77 40.29 20834 18704 2086 98.33 0.20236 0.19627 0.1995 0.25588 0.2569 RANDOM 56.958
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.79 -2.89 5.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.781 r_dihedral_angle_3_deg 19.38 r_dihedral_angle_4_deg 18.415 r_dihedral_angle_1_deg 6.773 r_scangle_it 3.182 r_scbond_it 2.018 r_angle_refined_deg 1.748 r_mcangle_it 1.431 r_mcbond_it 0.804 r_nbtor_refined 0.321
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.781 r_dihedral_angle_3_deg 19.38 r_dihedral_angle_4_deg 18.415 r_dihedral_angle_1_deg 6.773 r_scangle_it 3.182 r_scbond_it 2.018 r_angle_refined_deg 1.748 r_mcangle_it 1.431 r_mcbond_it 0.804 r_nbtor_refined 0.321 r_metal_ion_refined 0.26 r_nbd_refined 0.223 r_symmetry_vdw_refined 0.21 r_symmetry_hbond_refined 0.177 r_xyhbond_nbd_refined 0.169 r_chiral_restr 0.117 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5254 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 57
Software Software Software Name Purpose HKL-2000 data collection REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling