X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.22970.3-0.7M Sodium chloride, Na acetate, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties
Matthews coefficientSolvent content
2.4950.61

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.478α = 110.41
b = 66.512β = 91.49
c = 87.595γ = 93.64
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-IDAPS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.85096.40.0889.21.15808560.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.85028293150096.550.237190.23460.28515RANDOM37
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.770.88-0.782.371.55-1.99
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.642
r_dihedral_angle_3_deg15.957
r_dihedral_angle_4_deg13.584
r_dihedral_angle_1_deg4.939
r_angle_refined_deg1.009
r_scangle_it0.671
r_mcangle_it0.451
r_scbond_it0.383
r_nbtor_refined0.302
r_mcbond_it0.256
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.642
r_dihedral_angle_3_deg15.957
r_dihedral_angle_4_deg13.584
r_dihedral_angle_1_deg4.939
r_angle_refined_deg1.009
r_scangle_it0.671
r_mcangle_it0.451
r_scbond_it0.383
r_nbtor_refined0.302
r_mcbond_it0.256
r_symmetry_vdw_refined0.177
r_nbd_refined0.174
r_symmetry_hbond_refined0.122
r_xyhbond_nbd_refined0.108
r_chiral_restr0.058
r_bond_refined_d0.006
r_gen_planes_refined0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9120
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms306

Software

Software
Software NamePurpose
ADSCdata collection
PHASESphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling