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ABH2 cross-linked with undamaged dsDNA-1 containing cofactors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 16% PEG 5000, 0.1M sodium chloride, 0.025M magnesium chloride, 0.1M cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.86 57.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.966 α = 90 b = 60.544 β = 90.85 c = 65.455 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9795 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 50 96.2 0.053 7.7 56467
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.49 1.54 89.8 0.354 6 7.7 5210
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 20 3 47435 43675 2333 96.99 0.2205 0.17646 0.17506 0.1745 0.20221 0.2029 RANDOM 25.195
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.85 -0.04 -0.48 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.611 r_dihedral_angle_4_deg 17.561 r_dihedral_angle_3_deg 12.927 r_sphericity_bonded 6.624 r_dihedral_angle_1_deg 6.163 r_sphericity_free 4.227 r_scangle_it 3.815 r_scbond_it 2.729 r_rigid_bond_restr 2.408 r_mcangle_it 2.162
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.611 r_dihedral_angle_4_deg 17.561 r_dihedral_angle_3_deg 12.927 r_sphericity_bonded 6.624 r_dihedral_angle_1_deg 6.163 r_sphericity_free 4.227 r_scangle_it 3.815 r_scbond_it 2.729 r_rigid_bond_restr 2.408 r_mcangle_it 2.162 r_angle_refined_deg 1.464 r_mcbond_it 1.351 r_symmetry_hbond_refined 0.364 r_nbtor_refined 0.302 r_nbd_refined 0.196 r_symmetry_vdw_refined 0.18 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.082 r_bond_refined_d 0.008 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1644 Nucleic Acid Atoms 566 Solvent Atoms 338 Heterogen Atoms 27
Software Software Software Name Purpose ADSC data collection PHASES phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling