X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP62890.2M LiCl, 0.1M MES pH 6.0, 20% PEG6000. Cryo protection in 25% ethylene glycol, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
2.0740.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.722α = 90
b = 50.642β = 92.76
c = 60.506γ = 90
Symmetry
Space GroupP 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102011-05-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.10.97ALS5.0.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75098.90.08310.74.327452
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7386.70.2353.41197

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1Q4T1.738.8227400137698.20.17270.17140.197RANDOM12.5794
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.27-0.11-3.572.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.936
r_dihedral_angle_4_deg15.88
r_dihedral_angle_3_deg11.469
r_dihedral_angle_1_deg5.49
r_scangle_it3.494
r_scbond_it2.226
r_angle_refined_deg1.357
r_mcangle_it1.312
r_angle_other_deg0.862
r_mcbond_it0.707
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.936
r_dihedral_angle_4_deg15.88
r_dihedral_angle_3_deg11.469
r_dihedral_angle_1_deg5.49
r_scangle_it3.494
r_scbond_it2.226
r_angle_refined_deg1.357
r_mcangle_it1.312
r_angle_other_deg0.862
r_mcbond_it0.707
r_mcbond_other0.2
r_chiral_restr0.085
r_bond_refined_d0.012
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1874
Nucleic Acid Atoms
Solvent Atoms221
Heterogen Atoms30

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction