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Crystal structure of influenza A virus nucleoprotein with ligand
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.25 293 0.16 M NaCl, 0.1 M NaCitrate, 15% PEG 4000, pH 5.25, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.29 46.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.2 α = 90 b = 146.2 β = 90 c = 146.2 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.66 48.74 30097 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.66 48.7 2 30097 30097 1527 99.89 0.2468 0.245 0.2442 0.2804 0.2767 RANDOM 50.6486
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.347 r_dihedral_angle_4_deg 18.262 r_dihedral_angle_3_deg 15.299 r_dihedral_angle_1_deg 4.35 r_angle_refined_deg 0.862 r_scangle_it 0.749 r_mcangle_it 0.669 r_scbond_it 0.449 r_mcbond_it 0.372 r_nbtor_refined 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.347 r_dihedral_angle_4_deg 18.262 r_dihedral_angle_3_deg 15.299 r_dihedral_angle_1_deg 4.35 r_angle_refined_deg 0.862 r_scangle_it 0.749 r_mcangle_it 0.669 r_scbond_it 0.449 r_mcbond_it 0.372 r_nbtor_refined 0.29 r_nbd_refined 0.169 r_symmetry_vdw_refined 0.156 r_xyhbond_nbd_refined 0.115 r_symmetry_hbond_refined 0.111 r_chiral_restr 0.056 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6247 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms 64
Software Software Software Name Purpose MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XDS data scaling