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The crystal structure of A81 from Sulfolobus Turreted Icosahedral Virus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 295 18% MPD, 4% tertiary butanol, 0.1 M Na Citrate pH 5.8, 0.2 M ammonium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2 38.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.93 α = 90 b = 88.962 β = 123.48 c = 55.346 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Rh coated flat mirror, toroidal focusing mirror 2006-12-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97927, 0.97913, 0.91162 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 97.9 0.04 31.4 4.6 36459 35400 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 86.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 50 34142 33623 1770 98.48 0.16493 0.16333 0.1826 0.19599 0.2108 RANDOM 31.944
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 0.92 -0.71 1.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.994 r_dihedral_angle_3_deg 12.247 r_scangle_it 10.626 r_scbond_it 7.074 r_dihedral_angle_1_deg 4.415 r_mcangle_it 3.423 r_mcbond_it 2.056 r_angle_refined_deg 1.014 r_angle_other_deg 0.81 r_mcbond_other 0.738
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.994 r_dihedral_angle_3_deg 12.247 r_scangle_it 10.626 r_scbond_it 7.074 r_dihedral_angle_1_deg 4.415 r_mcangle_it 3.423 r_mcbond_it 2.056 r_angle_refined_deg 1.014 r_angle_other_deg 0.81 r_mcbond_other 0.738 r_chiral_restr 0.067 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2620 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 8
Software Software Software Name Purpose Blu-Ice data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling