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CASPASE2 IN COMPLEX WITH CHDI LIGAND 33c
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PYO pdb entry 1pyo
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 290 26% PEG 3500, 100MM MES PH 6.5 - PH 7.0, SITTING DROP, VAPOR DIFFUSION, TEMPERATURE 290K, VAPOR DIFFUSION, SITTING DROP
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.77 α = 90 b = 97.38 β = 90 c = 97.98 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2010-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 50 99.9 0.157 13.47 7.2 20552 20535 -3 22.72
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.62 100 0.519 4.6 7.2 1468
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1pyo 2.55 50 20535 20375 1040 99.9 0.19 0.19 0.186 0.1834 0.249 0.2482 RANDOM 10.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 0.03 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.685 r_dihedral_angle_4_deg 16.785 r_dihedral_angle_3_deg 14.39 r_dihedral_angle_1_deg 6.224 r_scangle_it 2.648 r_scbond_it 1.59 r_angle_refined_deg 1.311 r_mcangle_it 1.135 r_angle_other_deg 0.851 r_mcbond_it 0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.685 r_dihedral_angle_4_deg 16.785 r_dihedral_angle_3_deg 14.39 r_dihedral_angle_1_deg 6.224 r_scangle_it 2.648 r_scbond_it 1.59 r_angle_refined_deg 1.311 r_mcangle_it 1.135 r_angle_other_deg 0.851 r_mcbond_it 0.58 r_mcbond_other 0.107 r_chiral_restr 0.07 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4077 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms
Software Software Software Name Purpose StructureStudio data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling