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Crystal structure of the holo form of glutaredoxin C5 from Arabidopsis thaliana
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7.5 277 0.1 M HEPES, 70 % MPD, pH 7.5, Microbatch, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.81 56.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.747 α = 90 b = 111.747 β = 90 c = 58.476 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.8266 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 27.99 99 0.061 5.7 10043
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 27.99 10043 10043 508 99.03 0.19126 0.19126 0.18889 0.1877 0.2381 0.2341 RANDOM 57.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.08 0.17 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.368 r_dihedral_angle_3_deg 20.573 r_dihedral_angle_4_deg 19.909 r_dihedral_angle_1_deg 7.583 r_scangle_it 5.878 r_scbond_it 3.406 r_mcangle_it 2.31 r_angle_refined_deg 2.19 r_mcbond_it 1.23 r_chiral_restr 0.112
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.368 r_dihedral_angle_3_deg 20.573 r_dihedral_angle_4_deg 19.909 r_dihedral_angle_1_deg 7.583 r_scangle_it 5.878 r_scbond_it 3.406 r_mcangle_it 2.31 r_angle_refined_deg 2.19 r_mcbond_it 1.23 r_chiral_restr 0.112 r_bond_refined_d 0.023 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1589 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 44
Software Software Software Name Purpose Xnemo data collection MOLREP phasing REFMAC refinement XDS data reduction SCALA data scaling