☰ Navigation Tabs
Bullfrog M ferritin with iron(III) bound to the ferroxidase site
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MFR PDB entry 1MFR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 3M sodium formate, 8% v/v ethylene glycol,20 mM TRIS.HCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.2 70.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 210.719 α = 90 b = 210.719 β = 90 c = 324.41 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 1.2915 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 64.88 92.4 0.131 5 4.6 210135 1 2 46.042
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 89.1 0.393 3.3 4.6 29358
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1MFR 2.7 61.13 199524 199524 10510 92.32 0.176 0.176 0.17292 0.1729 0.23465 0.2313 RANDOM 29.646
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 -0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.018 r_dihedral_angle_3_deg 21.8 r_dihedral_angle_4_deg 20.204 r_dihedral_angle_1_deg 6.085 r_scangle_it 5.098 r_scbond_it 2.952 r_angle_refined_deg 1.856 r_mcangle_it 1.629 r_mcbond_it 0.761 r_chiral_restr 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.018 r_dihedral_angle_3_deg 21.8 r_dihedral_angle_4_deg 20.204 r_dihedral_angle_1_deg 6.085 r_scangle_it 5.098 r_scbond_it 2.952 r_angle_refined_deg 1.856 r_mcangle_it 1.629 r_mcbond_it 0.761 r_chiral_restr 0.13 r_bond_refined_d 0.02 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 33945 Nucleic Acid Atoms Solvent Atoms 1545 Heterogen Atoms 50
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling