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Crystal structure of HmrA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 278 49% MPD, 100mM Tris, 0.1mM ATP, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 278K
Crystal Properties Matthews coefficient Solvent content 4.29 71.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.73 α = 90 b = 132.73 β = 90 c = 336.89 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 315r 2009-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97925 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 48.52 99.6 0.091 0.091 83170
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.7 48.52 2 83170 81664 1396 99.55 0.19103 0.1905 0.1955 0.21768 0.2233 RANDOM 42.906
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.41 -1.41 2.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.849 r_dihedral_angle_4_deg 18.266 r_dihedral_angle_3_deg 15.251 r_dihedral_angle_1_deg 5.854 r_scangle_it 2.241 r_scbond_it 1.395 r_angle_refined_deg 1.172 r_angle_other_deg 0.861 r_mcangle_it 0.763 r_mcbond_it 0.369
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.849 r_dihedral_angle_4_deg 18.266 r_dihedral_angle_3_deg 15.251 r_dihedral_angle_1_deg 5.854 r_scangle_it 2.241 r_scbond_it 1.395 r_angle_refined_deg 1.172 r_angle_other_deg 0.861 r_mcangle_it 0.763 r_mcbond_it 0.369 r_chiral_restr 0.068 r_mcbond_other 0.054 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11980 Nucleic Acid Atoms Solvent Atoms 366 Heterogen Atoms 201
Software Software Software Name Purpose ADSC data collection SHELXS phasing REFMAC refinement XDS data reduction SCALA data scaling