☰ Navigation Tabs
Crystal Structure of UDP-glucose Pyrophosphorylase of Homo Sapiens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 290 MgSO4, 35.8% PEG3350, glycerol, HEPES, pH 6.5, vapor diffusion, hanging drop, temperature 290K
Crystal Properties Matthews coefficient Solvent content 3.75 67.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 140.445 α = 90 b = 140.445 β = 90 c = 311.724 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2009-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 1.000 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.6 120 96.9 39283 39283 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.6 3.69 64.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.6 20 39283 1985 93.97 0.2502 0.2475 0.2668 0.3038 0.3146 RANDOM 144.356
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.72 2.36 4.72 -7.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.341 r_dihedral_angle_3_deg 22.049 r_dihedral_angle_4_deg 19.929 r_dihedral_angle_1_deg 7.032 r_scangle_it 1.946 r_angle_refined_deg 1.558 r_scbond_it 1.071 r_mcangle_it 0.9 r_mcbond_it 0.468 r_chiral_restr 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.341 r_dihedral_angle_3_deg 22.049 r_dihedral_angle_4_deg 19.929 r_dihedral_angle_1_deg 7.032 r_scangle_it 1.946 r_angle_refined_deg 1.558 r_scbond_it 1.071 r_mcangle_it 0.9 r_mcbond_it 0.468 r_chiral_restr 0.1 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13938 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing