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DyPB from Rhodococcus jostii RHA1, crystal form 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 1.26 M ammonium sulfate, 0.1 M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.73 66.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.699 α = 90 b = 127.699 β = 90 c = 178.242 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Rh coated flat mirror 2010-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.0 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 93.972 98.9 0.049 16.3 6.1 108171 108171
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 96.2 0.387 0.387 2 5.3 15243
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 33.93 108165 5407 98.86 0.131 0.1301 0.1301 0.1475 0.1471 RANDOM 17.2251
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.43 0.21 0.43 -0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.995 r_dihedral_angle_4_deg 17.043 r_dihedral_angle_3_deg 10.281 r_dihedral_angle_1_deg 5.73 r_scangle_it 4.458 r_scbond_it 3.142 r_mcangle_it 2.237 r_angle_refined_deg 1.42 r_rigid_bond_restr 1.391 r_mcbond_it 1.379
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.995 r_dihedral_angle_4_deg 17.043 r_dihedral_angle_3_deg 10.281 r_dihedral_angle_1_deg 5.73 r_scangle_it 4.458 r_scbond_it 3.142 r_mcangle_it 2.237 r_angle_refined_deg 1.42 r_rigid_bond_restr 1.391 r_mcbond_it 1.379 r_chiral_restr 0.093 r_bond_refined_d 0.012 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2356 Nucleic Acid Atoms Solvent Atoms 412 Heterogen Atoms 83
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection