3QNI

Crystal structure of human PACSIN 1 F-BAR domain


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
3.3663.42

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 147.899α = 90
b = 83.739β = 114.4
c = 86.511γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2009-12-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U0.9795SSRFBL17U

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.85093.822632212321.51.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.8302263221232111793.780.208110.204050.28376RANDOM72.478
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.94-7.350.22-9.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.485
r_dihedral_angle_3_deg23.43
r_dihedral_angle_4_deg23.178
r_dihedral_angle_1_deg6.287
r_sphericity_free5.28
r_scangle_it3.168
r_scbond_it1.889
r_sphericity_bonded1.656
r_angle_refined_deg1.65
r_rigid_bond_restr1.187
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.485
r_dihedral_angle_3_deg23.43
r_dihedral_angle_4_deg23.178
r_dihedral_angle_1_deg6.287
r_sphericity_free5.28
r_scangle_it3.168
r_scbond_it1.889
r_sphericity_bonded1.656
r_angle_refined_deg1.65
r_rigid_bond_restr1.187
r_mcangle_it1.077
r_mcbond_it0.555
r_chiral_restr0.117
r_bond_refined_d0.016
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4461
Nucleic Acid Atoms
Solvent Atoms199
Heterogen Atoms2

Software

Software
Software NamePurpose
HKL-2000data collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling