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Enantiopyochelin outer membrane TonB-dependent transporter from Pseudomonas fluorescens bound to the ferri-enantiopyochelin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BY3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 293 14% PEG1500, 0.1M lithium sulfate, 0.1M sodium citrate, 20% glycerol, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.71 73.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 155.07 α = 90 b = 170.83 β = 90 c = 232.62 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Mirrors 2010-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.95024 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.25 48.57 99.3 0.137 16.11 8.2 48366 48366 -3 78.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.26 3.34 96.4 0.659 8.1 3436
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1BY3 3.26 48.57 48332 45793 2426 99.03 0.21648 0.21648 0.21419 0.2141 0.2588 0.2562 RANDOM 70.493
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 9.99 -1.69 -8.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.291 r_dihedral_angle_3_deg 21.368 r_dihedral_angle_4_deg 20.367 r_dihedral_angle_1_deg 7.688 r_scangle_it 2.741 r_angle_refined_deg 2.079 r_scbond_it 1.525 r_mcangle_it 1.228 r_mcbond_it 0.641 r_chiral_restr 0.118
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.291 r_dihedral_angle_3_deg 21.368 r_dihedral_angle_4_deg 20.367 r_dihedral_angle_1_deg 7.688 r_scangle_it 2.741 r_angle_refined_deg 2.079 r_scbond_it 1.525 r_mcangle_it 1.228 r_mcbond_it 0.641 r_chiral_restr 0.118 r_bond_refined_d 0.017 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10449 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 80
Software Software Software Name Purpose X-NEMO data collection PHASER phasing REFMAC refinement XDS data reduction XDS data scaling