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Crystal Structure of APAH complexed with CAPS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other A lower resolution model solved by SAD phasing.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 298 1.0 M sodium phosphate, 0.8 M potassium phosphate, 0.2 M lithium sulfate, 0.1 M CAPS pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.43 64.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.252 α = 98.34 b = 119.651 β = 94.94 c = 119.571 γ = 114.95
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Kirpatrick Baez focusing mirrors 2009-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97949 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 91.1 0.099 0.099 14.486 3.2 241603 220139 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.35 2.43 97.6 0.6 0.6 2.5 3.2 23436
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT A lower resolution model solved by SAD phasing. 2.35 50 241603 220139 11007 91.1 0.1886 0.1886 0.1886 0.1886 0.2253 0.2252 random 38.044
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.191 4.321 -9.762 -4.189 5.153 0.998
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.934 c_scbond_it 1.982 c_mcangle_it 1.826 c_angle_deg 1.274 c_mcbond_it 1.152 c_bond_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 30806 Nucleic Acid Atoms Solvent Atoms 1393 Heterogen Atoms 272
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction APS-24IDC data collection HKL-2000 data reduction HKL-2000 data scaling CNS phasing