☰ Navigation Tabs
Crystal Structure of APAH complexed with M344
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3Q9F PDB ENTRY 3Q9F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 298 1.0 M sodium phosphate, 0.8 M potassium phosphate, 0.2 M lithium sulfate, 0.1 M CAPS pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.43 64.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.657 α = 98.09 b = 119.734 β = 95.15 c = 119.526 γ = 115.33
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Kirpatrick Baez focusing mirrors 2009-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97949 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 50 98.4 0.096 0.096 14.792 3.6 275467 270384 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.25 2.33 97.2 0.326 0.326 2.853 2.6 26691
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 3Q9F 2.25 50 1 275467 259098 12854 94.1 0.1707 0.1707 0.1715 0.2018 0.2022 random 23.2439
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.806 1.618 -4.982 -0.876 1.009 -1.931
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 3.078 c_scbond_it 2.072 c_mcangle_it 1.699 c_angle_deg 1.214 c_mcbond_it 1.106 c_bond_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 30811 Nucleic Acid Atoms Solvent Atoms 2243 Heterogen Atoms 743
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction APS-24IDC data collection HKL-2000 data reduction HKL-2000 data scaling CNS phasing