☰ Navigation Tabs
Crystal structure of the Bombyx mori low molecular weight lipoprotein 7 (Bmlp7)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.05M 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (pH 7.5), 0.2M KCl, 28% pentaerythritol propoxylate (17/8, PO/OH), VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.89 34.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.855 α = 93.26 b = 49.322 β = 94.04 c = 54.79 γ = 103.47
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD RAYONIX MX-225 2009-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9795 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 50 96.8 31866
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 1.94 95.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.91 47.83 30258 1602 96.67 0.19464 0.1925 0.201 0.23506 0.243 RANDOM 25.828
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 -0.49 1.26 -0.54 -0.58 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.989 r_dihedral_angle_4_deg 17.152 r_dihedral_angle_3_deg 13.914 r_dihedral_angle_1_deg 6.307 r_scangle_it 3.217 r_scbond_it 2.038 r_mcangle_it 1.22 r_angle_refined_deg 1.186 r_mcbond_it 0.651 r_chiral_restr 0.082
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.989 r_dihedral_angle_4_deg 17.152 r_dihedral_angle_3_deg 13.914 r_dihedral_angle_1_deg 6.307 r_scangle_it 3.217 r_scbond_it 2.038 r_mcangle_it 1.22 r_angle_refined_deg 1.186 r_mcbond_it 0.651 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3839 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling