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Urate oxidase under 1.0 MPa / 10 bars pressure of xenon
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IBA PDB ENTRY 2IBA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH 8.5 298 10-15 MG/ML URATE OXIDASE, 8-AZAXANTHINE 0.2 MG/ML, TRIS 50 MM, PEG 8000 5-8%, NACL 0-50 MM, pH 8.5, BATCH, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.97 58.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.117 α = 90 b = 96.183 β = 90 c = 105.463 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE MAR scanner 345 mm plate MIRRORS 2007-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.976 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 97.1 0.045 31.8 4.9 43762 18.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 84.4 0.296 3.5 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION RIGID BODY THROUGHOUT PDB ENTRY 2IBA 1.701 19.45 41529 2204 97.13 0.16801 0.16678 0.19171 0.1932 RANDOM 20.711
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.154 r_dihedral_angle_3_deg 11.862 r_dihedral_angle_4_deg 9.612 r_dihedral_angle_1_deg 6.035 r_scangle_it 4.342 r_scbond_it 2.525 r_mcangle_it 1.704 r_angle_refined_deg 1.481 r_mcbond_it 0.89 r_chiral_restr 0.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.154 r_dihedral_angle_3_deg 11.862 r_dihedral_angle_4_deg 9.612 r_dihedral_angle_1_deg 6.035 r_scangle_it 4.342 r_scbond_it 2.525 r_mcangle_it 1.704 r_angle_refined_deg 1.481 r_mcbond_it 0.89 r_chiral_restr 0.097 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2362 Nucleic Acid Atoms Solvent Atoms 177 Heterogen Atoms 15
Software Software Software Name Purpose HKL-2000 data collection REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling