☰ Navigation Tabs
Structure of the PDlim2 PDZ domain in complex with the C-terminal 6-peptide extension of NS1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.2 293 0.2M NaCl, 0.1M HEPES, 22.5% PEG3350, pH 8.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.39 48.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.917 α = 90 b = 81.917 β = 90 c = 81.917 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE RIGAKU RAXIS HTC M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 99.79 4588 4548
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 19.31 4548 215 99.79 0.20009 0.19799 0.2489 0.2494 RANDOM 27.547
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.597 r_dihedral_angle_4_deg 21.008 r_dihedral_angle_3_deg 15.933 r_dihedral_angle_1_deg 5.731 r_scangle_it 2.558 r_scbond_it 1.369 r_angle_refined_deg 1.187 r_mcangle_it 0.984 r_mcbond_it 0.507 r_nbtor_refined 0.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.597 r_dihedral_angle_4_deg 21.008 r_dihedral_angle_3_deg 15.933 r_dihedral_angle_1_deg 5.731 r_scangle_it 2.558 r_scbond_it 1.369 r_angle_refined_deg 1.187 r_mcangle_it 0.984 r_mcbond_it 0.507 r_nbtor_refined 0.294 r_nbd_refined 0.197 r_metal_ion_refined 0.185 r_symmetry_vdw_refined 0.179 r_xyhbond_nbd_refined 0.167 r_symmetry_hbond_refined 0.164 r_chiral_restr 0.068 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 658 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms 1
Software Software Software Name Purpose HKL-2000 data collection PHASES phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling