3P3O

Crystal Structure of the Cytochrome P450 Monooxygenase AurH (ntermII) from Streptomyces Thioluteus


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.72930.1M NaCl, 2.2M AS, 0.1 M Tris pH=8.6-8.8, 14 mg/mL, pH 8.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4850.39

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 129.06α = 90
b = 129.06β = 90
c = 71.41γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2008-06-08MSINGLE WAVELENGTH
21x-ray100CCDMARMOSAIC 225 mm CCD2007-11-19MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.91841BESSY14.1
2SYNCHROTRONBESSY BEAMLINE 14.11.73844, 1.74044, 1.63138, 1.85053BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.542098.927.57.165526648063328.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.541.5899.32.92.94832

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.5419.326156332401000.158010.156460.18769RANDOM14.586
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.74-0.37-0.741.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.509
r_dihedral_angle_4_deg16.474
r_dihedral_angle_3_deg13.29
r_dihedral_angle_1_deg5.883
r_scangle_it4.464
r_scbond_it3.362
r_mcangle_it2.989
r_mcbond_it2.129
r_angle_refined_deg1.575
r_angle_other_deg0.978
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.509
r_dihedral_angle_4_deg16.474
r_dihedral_angle_3_deg13.29
r_dihedral_angle_1_deg5.883
r_scangle_it4.464
r_scbond_it3.362
r_mcangle_it2.989
r_mcbond_it2.129
r_angle_refined_deg1.575
r_angle_other_deg0.978
r_mcbond_other0.969
r_chiral_restr0.095
r_bond_refined_d0.015
r_gen_planes_refined0.008
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3249
Nucleic Acid Atoms
Solvent Atoms425
Heterogen Atoms63

Software

Software
Software NamePurpose
MAR345dtbdata collection
SHARPphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling