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Crystal structure of the ENE, a viral RNA stability element, in complex with A9 RNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 293 17% MPD, 0.09 M magnesium acetate, 0.05 M MES, pH 5.6 , VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.746 α = 90 b = 50.869 β = 125.06 c = 91.38 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-07-11 M SINGLE WAVELENGTH 2 2 x-ray 100 CCD ADSC QUANTUM 315 2009-10-10 M SINGLE WAVELENGTH 3 3 x-ray 100 CCD ADSC QUANTUM 315 2009-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.0809 NSLS X29A 2 SYNCHROTRON NSLS BEAMLINE X29A 1.1048, 1.1052, 1.0858 NSLS X29A 3 SYNCHROTRON NSLS BEAMLINE X29A 1.1051, 1.1054 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 2.5 50 97.8 0.06 20.5 3.7 19113 18693 1 83.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.59 85.3 0.977 1 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.501 50 18147 17722 965 97.66 0.21913 0.21913 0.21834 0.2222 0.23343 0.2354 RANDOM 59.938
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.48 -1.36 2.04 -1.12
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 1.741 r_angle_refined_deg 1.318 r_scbond_it 1.083 r_chiral_restr 0.06 r_bond_refined_d 0.009 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 4148 Solvent Atoms 18 Heterogen Atoms
Software Software Software Name Purpose CBASS data collection MLPHARE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling