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anti-EGFR/HER3 Fab DL11 in complex with domains I-III of the HER3 extracellular region
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 295 PEG 1500, pH 9, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.47 50.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 208.392 α = 90 b = 48.397 β = 127.71 c = 130.381 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315 Si 2009-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 50 99.9 0.11 12 3.5 13436 13436 -2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.7 50 13378 10774 574 99.92 0.24922 0.24542 0.2404 0.32299 0.3233 RANDOM 159.543
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.11 -4.81 2.85 -1.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.544 r_dihedral_angle_3_deg 18.147 r_dihedral_angle_4_deg 16.366 r_dihedral_angle_1_deg 6.564 r_scangle_it 3.154 r_scbond_it 1.782 r_angle_refined_deg 1.119 r_mcangle_it 1.088 r_angle_other_deg 0.816 r_mcbond_it 0.465
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.544 r_dihedral_angle_3_deg 18.147 r_dihedral_angle_4_deg 16.366 r_dihedral_angle_1_deg 6.564 r_scangle_it 3.154 r_scbond_it 1.782 r_angle_refined_deg 1.119 r_mcangle_it 1.088 r_angle_other_deg 0.816 r_mcbond_it 0.465 r_symmetry_vdw_refined 0.166 r_xyhbond_nbd_refined 0.152 r_symmetry_hbond_refined 0.141 r_chiral_restr 0.058 r_mcbond_other 0.047 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7149 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 56
Software Software Software Name Purpose BOS data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling