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Design and Synthesis of Disubstituted Thiophene and Thiazole Based Inhibitors of JNK for the Treatment of Neurodegenerative Diseases
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 277 0.1 M sodium citrate pH 5.5, 20% (w/v) PEG3000, and 15% (v/v) glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.28 45.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.02 α = 90 b = 78.081 β = 90 c = 83.514 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 CCD ADSC QUANTUM 210r 2007-02-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9788 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 32.7 87.7 20492 18718 2 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.201 2.258 87.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 32.73 2 20492 18718 1015 96.26 0.23168 0.22933 0.2324 0.27545 0.2855 RANDOM 45.375
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.86 2.09 0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.049 r_dihedral_angle_4_deg 22.132 r_dihedral_angle_3_deg 20.018 r_dihedral_angle_1_deg 6.93 r_scangle_it 2.76 r_scbond_it 1.851 r_mcangle_it 1.578 r_angle_refined_deg 1.571 r_mcbond_it 1.413 r_angle_other_deg 0.977
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.049 r_dihedral_angle_4_deg 22.132 r_dihedral_angle_3_deg 20.018 r_dihedral_angle_1_deg 6.93 r_scangle_it 2.76 r_scbond_it 1.851 r_mcangle_it 1.578 r_angle_refined_deg 1.571 r_mcbond_it 1.413 r_angle_other_deg 0.977 r_symmetry_vdw_refined 0.254 r_symmetry_vdw_other 0.246 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.214 r_nbd_other 0.202 r_symmetry_hbond_refined 0.199 r_nbtor_refined 0.183 r_mcbond_other 0.176 r_nbtor_other 0.092 r_chiral_restr 0.087 r_xyhbond_nbd_other 0.024 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2707 Nucleic Acid Atoms Solvent Atoms 84 Heterogen Atoms 18
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling