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Bace1 in complex with the aminohydantoin Compound 102
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W50 PDB ENTRY 1W50
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.4 291 pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.07 40.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.927 α = 90 b = 104.664 β = 94.91 c = 50.54 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD RIGAKU SATURN 92 2006-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 22.7 93.45 32584 32664 1.2 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1W50 1.8 22.7 31015 1650 93.45 0.21657 0.21463 0.2147 0.25333 0.2555 RANDOM 25.566
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.86 -0.8 -0.16 0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.864 r_dihedral_angle_4_deg 23.336 r_dihedral_angle_3_deg 13.42 r_dihedral_angle_1_deg 6.528 r_scangle_it 2.083 r_scbond_it 1.341 r_angle_refined_deg 1.208 r_mcangle_it 0.927 r_mcbond_it 0.581 r_symmetry_hbond_refined 0.331
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.864 r_dihedral_angle_4_deg 23.336 r_dihedral_angle_3_deg 13.42 r_dihedral_angle_1_deg 6.528 r_scangle_it 2.083 r_scbond_it 1.341 r_angle_refined_deg 1.208 r_mcangle_it 0.927 r_mcbond_it 0.581 r_symmetry_hbond_refined 0.331 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.237 r_nbd_refined 0.19 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.082 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2895 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms 31
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling