3OJP

D52N Mutant of Hen Egg White Lysozyme (HEWL)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.5291NaCl, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
238.48

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.76α = 90
b = 78.76β = 90
c = 36.95γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATERIGAKU RAXIS IV++Osmic mirrors2008-08-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-0071.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8155.6999.90.0970.09714.47.21104511045
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.811.911000.6480.6481.27.11564

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1lsb1.8135.22110451100552799.710.1690.16660.2191RANDOM18.5586
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.090.09-0.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.209
r_dihedral_angle_4_deg17.8
r_dihedral_angle_3_deg13.255
r_dihedral_angle_1_deg6.335
r_scangle_it4.686
r_scbond_it3.015
r_mcangle_it1.856
r_angle_refined_deg1.659
r_mcbond_it1.086
r_angle_other_deg1.056
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.209
r_dihedral_angle_4_deg17.8
r_dihedral_angle_3_deg13.255
r_dihedral_angle_1_deg6.335
r_scangle_it4.686
r_scbond_it3.015
r_mcangle_it1.856
r_angle_refined_deg1.659
r_mcbond_it1.086
r_angle_other_deg1.056
r_mcbond_other0.377
r_chiral_restr0.113
r_bond_refined_d0.021
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1001
Nucleic Acid Atoms
Solvent Atoms129
Heterogen Atoms17

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection