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Derivative structure of the UDP-N-acetyl-mannosamine dehydrogenase Cap5O from S. aureus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 290 15mg/ml CAP5O, 5mM NAD, 50mM Eu(PDC)3, 32% PEG 4000, 0.2M sodium acetate, 0.1M Tris-HCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.18 43.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.22 α = 90 b = 131.497 β = 90 c = 158.82 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 1.2525 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 99.7 0.089 0.104 14.4 6.6 30070 30070 58.07
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 98.3 0.571 0.719 2.2 4.6 4196
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 29.63 30007 30007 1525 0.2035 0.2035 0.2012 0.2056 0.2456 0.2572 RANDOM 57.66
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.2618 13.1736 -7.9119
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.9 t_omega_torsion 2.79 t_angle_deg 1.28 t_gen_planes 0.0147 t_bond_d 0.01 t_trig_c_planes 0.0074 t_dihedral_angle_d t_it t_nbd t_chiral_improper_torsion
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.9 t_omega_torsion 2.79 t_angle_deg 1.28 t_gen_planes 0.0147 t_bond_d 0.01 t_trig_c_planes 0.0074 t_dihedral_angle_d t_it t_nbd t_chiral_improper_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6465 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 162
Software Software Software Name Purpose ADSC data collection SOLVE phasing BUSTER refinement MOSFLM data reduction SCALA data scaling