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Crystal Structure of Cytochrome P450cam crystallized in the presence of a tethered substrate analog AdaC1-C8GluEtg-Bio
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RE9 PDB entry 1RE9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 sitting-drop vapor diffusion 6.5 279 12-22% PEG 8000, 0.1M Sodium cacodylate, pH 6.5, 0.1-0.2M KCl, sitting-drop vapor diffusion, temperature 279K
Crystal Properties Matthews coefficient Solvent content 2.45 49.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.258 α = 90 b = 75.089 β = 90 c = 93.168 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r RH COATED FLAT MIRROR 2007-11-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.97946 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 93.25 86.3 0.055 0.055 20.3 3.7 61156 52340 17.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.69 81.9 0.452 0.452 1.4 3.7 7145
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1RE9 1.65 10 55849 47773 2441 86.02 0.1894 0.1871 0.1848 0.2344 0.2307 RANDOM 20.6765
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.53 0.38 -0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.295 r_dihedral_angle_3_deg 13.263 r_dihedral_angle_4_deg 13.236 r_dihedral_angle_1_deg 5.673 r_scangle_it 3.264 r_scbond_it 1.986 r_angle_refined_deg 1.367 r_mcangle_it 1.251 r_mcbond_it 0.691 r_chiral_restr 0.099
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.295 r_dihedral_angle_3_deg 13.263 r_dihedral_angle_4_deg 13.236 r_dihedral_angle_1_deg 5.673 r_scangle_it 3.264 r_scbond_it 1.986 r_angle_refined_deg 1.367 r_mcangle_it 1.251 r_mcbond_it 0.691 r_chiral_restr 0.099 r_bond_refined_d 0.011 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3206 Nucleic Acid Atoms Solvent Atoms 482 Heterogen Atoms 74
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection