3OD3

CueO at 1.1 A resolution including residues in previously disordered region


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.629316% POLYETHYLENE GLYCOL 4000, 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM ACETATE, PH 4.6; , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K , VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
2.2244.71

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.162α = 90
b = 90.766β = 102.99
c = 53.639γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCD2007-04-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-2.9794SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.119990.0848.45.1186417186417
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.11.141000.3542.54.518634

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1KV71.119177031935398.650.155420.153820.18545RANDOM16.155
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.350.09-0.070.46
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.773
r_dihedral_angle_4_deg19.159
r_dihedral_angle_3_deg12.423
r_dihedral_angle_1_deg6.596
r_scangle_it5.847
r_scbond_it4.257
r_mcangle_it3.542
r_mcbond_it2.503
r_mcbond_other1.622
r_angle_refined_deg1.42
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.773
r_dihedral_angle_4_deg19.159
r_dihedral_angle_3_deg12.423
r_dihedral_angle_1_deg6.596
r_scangle_it5.847
r_scbond_it4.257
r_mcangle_it3.542
r_mcbond_it2.503
r_mcbond_other1.622
r_angle_refined_deg1.42
r_rigid_bond_restr1.032
r_angle_other_deg0.882
r_chiral_restr0.083
r_bond_refined_d0.01
r_gen_planes_refined0.007
r_gen_planes_other0.003
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3747
Nucleic Acid Atoms
Solvent Atoms530
Heterogen Atoms13

Software

Software
Software NamePurpose
Blu-Icedata collection
notmodel building
REFMACrefinement
CrystalCleardata reduction
CrystalCleardata scaling
notphasing