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Crystal Structure of Sperm Whale Myoglobin G65T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8.5 293 2.6M AS, 50mM Tris 8.5, 1mM EDTA, EVAPORATION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.09 60.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.439 α = 90 b = 90.439 β = 90 c = 45.247 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 300 mm CCD 2009-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.05 50 88.8 0.049 17.7 3.7 87374
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.05 1.07 14.6 0.556 1.1 711
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.1 31.99 83174 4156 97.14 0.1727 0.1721 0.1829 0.1853 RANDOM 15.258
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.85 r_dihedral_angle_3_deg 12.146 r_dihedral_angle_4_deg 11.59 r_dihedral_angle_1_deg 4.606 r_scangle_it 2.946 r_scbond_it 1.962 r_mcangle_it 1.264 r_angle_refined_deg 1.034 r_mcbond_it 0.768 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.85 r_dihedral_angle_3_deg 12.146 r_dihedral_angle_4_deg 11.59 r_dihedral_angle_1_deg 4.606 r_scangle_it 2.946 r_scbond_it 1.962 r_mcangle_it 1.264 r_angle_refined_deg 1.034 r_mcbond_it 0.768 r_nbtor_refined 0.304 r_nbd_refined 0.201 r_symmetry_vdw_refined 0.195 r_symmetry_hbond_refined 0.091 r_chiral_restr 0.074 r_xyhbond_nbd_refined 0.072 r_bond_refined_d 0.006 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1219 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms 53
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data collection HKL-2000 data reduction AMoRE phasing